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16 bit files, or files with more than 3 channels are not supported by any software - other than 3D-Histech software - that we are aware ofshould be converted to tif file
The way to convert is to run bioformats2raw utility, followed by raw2ometiff , as described in this Glencore blog.
We have implemented this in the facility - contact Vitaly Golodnitsky or Ofra Golani for instructions.
QuPath- open source software for Quantitative digital Pathology - We recommend using QuPath
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