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Color RGB images OR
Up to 3 fluorescence channels of 8bit.
16 bit files, or files with more than 3 channels should be converted to tif file
The way to convert is to run bioformats2raw utility, followed by raw2ometiff , as described in this Glencore blog.
We have implemented this in the facility - contact Vitaly Golodnitsky or Ofra Golani for instructions.
QuPath- open source software for Quantitative digital Pathology - We recommend using QuPath. See our Image Analysis training material page for QuPath training links.
Arivis- commercial, we have one license in the CellObservatory unit, can be booked through internal services. Please contact us if you want to use it.
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if you are interested to know more about digital slides formats see the OpenSlide publication
16 bit mrxs files, or mrxs files with more than 3 channels should be converted to tif file
The way to convert is to run bioformats2raw utility, followed by raw2ometiff , as described in this Glencore blog.
We have implemented this in the facility - contact Vitaly Golodnitsky or Ofra Golani for instructions.
3D Histech provides 2 free software tools for viewing and exporting the files:
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