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Frequently Asked Questions:

  • How do I save and access my data?

Once you saved your data at At the end of the experiment, save the data in the “SWAP (z:)” driver.

Once the data is synchronized to “SWAP”.

  • Why do I need to clear my sample?

In order to optimize the optical path through the sample.in the sever, connect to one of the following workstations: Bali/Maldives/Jamaica/Bahamas.

On the workstation desktop find and click on the script “map SWAP“.

Next, transfer your data from SWAP to the gpfs0(G) disk (ESS) in the following manner:

Open driver G.

Go to the “Labs” folder, open the folder of your PI, open a folder with your Weizmann user name.

Copy data from SWAP to the “Raw_Data” folder.

Before you delete the data from SWAP make sure that the data is fully copied and opens in the relevant analysis software. Also, note that only the “Raw_Data” and “Analyzed_Data” folders are backed up.

Please note that only data acquired on the Lightsheet microscopes can be stored on the gpfs disk (ESS). No other data is allowed on this gpfs disk !!!

For Data organization on the ESS, please refer to ESS Guidelines

  • stiching

Tip

Learn more about Light Sheet microscopy:

Light Sheet Sectioning

Richardson, D. S., & Lichtman, J. W. (2015). Clarifying tissue clearing. Cell, 162(2), 246-257.‏

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